more rest, ice and more biking.
I have the same issue when I train for long runs my left Achilles does the same thing. The pain goes away after the first few miles but then it's sore for days afterwards with visible swelling.
As far as treatment you nailed it dude, my wife is a PT and that is what she has me do, that and some alieve to fight the inflammation. Also make sure to stretch it after you run and a few times a day to keep it loose.
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09 Silverado 2500HD CC LTZ Duramax 4" Diamond Eye SS Exhaust, tuned with EFI.
09 Mercedes C300 4matic
